Scilligence

Chem4SharePoint™ enables chemistry capabilities within SharePoint.  With Chem4SharePoint, scientists are able to draw, display, and search chemical structures in SharePoint.  Chem4SharePoint also provides an out-of-the-box solution for a one-stop-shopping chemical structure search capability for enterprises.

Chem4SharePoint 2.0.3 release includes following improvements and changes:

1. Bugfix: text not searchable in PDF files
2. Bugfix: SDF data not imported when appending sdf with space chars in field names
3. Bugfix: SDF cannot appended if filenames contains special characters

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

Scilligence Cheminformatics Development Suite (DevSuite, http://devsuite.scilligence.com) is a complete toolkits for developers to build web applications and .NET applications.  Dev Suite contains following key modules:

1. JSDraw - 100% Javascript Chemical/Biological Structure Editor
2. JSDraw.WebServices - JSDraw server side web services to exend JSDraw capabilities
3. MolEngine - .NET Cheminformatics Toolkit
4. MolEngine.Plugins - Third-party modules to extend MolEngine capabilities
5. MolSql - Chemistry Cartridge for Microsoft SQL Server

This release includes:

1. JSDraw 2.1.2
   1. bugfix: it's hard to re-use Undo/Redo, Zoom in/out etc.
2. JSDraw.WebServices 2.1.2
   1. Upgraded MolEngine to 1.3.9
   2. Add CompProfile as a new MolEnginge Web Service
      
   3. Add CompoundIDLookup as a new MolEnginge Web Service
      
3. MolEngine 1.3.9
   1. bugfix: Cannot read some ChemDraw objects
   2. bugfix: Saveimage is broken on Linux
   3. bugfix: One stereo center is missing when reading "CC[C@@H](C(=O)[O-])[S@](=N)(=O)c1ccccc1"
   4. Add CompProfile as a new MolEnginge Web Service
   5. Add Html parser to MolEngine.Companion
   6. Add class Utils to MolEngine.Companion
   7. bugfix: Hydrogens shown in wrong direction for Diovan
   8. Be able to draw black&white structures by setting forecolor
   9. Add MolName to MolBase class
   10. Add CompoundIDLookup to MolEngine.Companion
4. MolEngine Plugins
   1. No updates in the release
5. MolSql 1.3.8
   1. No updates in this release

To download DevSuite or individual modules:

1. JSDraw: http://www.scilligence.com/web/download.aspx?prod=JSDraw
2. JSDraw.WebServices: http://www.scilligence.com/web/download.aspx?prod=JSDraw.WebServices
3. MolEngine: http://www.scilligence.com/web/download.aspx?prod=MolEngine
4. MolEngine.Plugins: http://www.scilligence.com/web/download.aspx?prod=MolEngine.Plugins
5. MolSql: http://www.scilligence.com/web/download.aspx?prod=MolSql

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

Upcoming TouchMol for MS Office release supports Office 2013:

Scilligence ELN is a completely web-based electronic lab notebook system for Chemistry and Biology.

Scilligence ELN 1.2.0 includes following changes and improvements:

1. JSDraw is upgraded to version 2.1.1
2. Structures can be directly copied from, and paste to, ChemDraw, ISIS/Draw, Marvin, SciFinder
3. Structures can be directly pasted to Word
4. Project code of projects can be carried over to RegMol when regstering them in ELN side

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

RegMol is compound registration and assay database system, enabling scientists to register and track small-molecule, biologics and biological conjugates, storing and retreiving biological assay data.

RegMol 1.2.0 includes following improvements and changes:

1. Be able to carry over Project Code from ELN to Registration
2. Be able to select all batch fields in Assay View
3. Support Molfile V3000
4. General Copy/Paste from/to ChemDraw, ISIS/Draw, and paste to Word
5. Batch custom properties and appearance can be selected from a list
6. Auto-suggest Vendors
7. DB Change: create index IX_Batches_Vendor
   

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

Chem4SharePoint™ enables chemistry capabilities within SharePoint.  With Chem4SharePoint, scientists are able to draw, display, and search chemical structures in SharePoint.  Chem4SharePoint also provides an out-of-the-box solution for a one-stop-shopping chemical structure search capability for enterprises.

Chem4SharePoint 2.0.2 release includes following improvements and changes:

1. Bugfix: OSR is broken
2. Bugfix: Structures from other data sources are showed up if searching one data source
3. Upgrade document readers
4. Bugfix: failed to read Clide result file
5. Reading structures embedded in OneNote
6. Supporting TouchMol for Office
7. Integrated with following new modules: Chrawler 2.0.2, JSDraw 2.1.1, MolEngine 1.3.8 and MolSql 1.3.8

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

Chrawler™ is a federated chemical structure search solution for enterprises, which enables users to do one-stop search cross all data sources, including files on network drives, SharePoint database, Emails, ELN, and other databases (Oracle, SQL Server etc.)

Chrawler™ SE 2.0.2 release includes following improvements and changes:

1. Bugfix: Structures from other data sources are showed up if searching one data source
2. Upgrade document readers
3. Bugfix: failed to read Clide result file
4. Reading structures embedded in OneNote
5. Reading structures created by TouchMol for Office
6. DB CHANGEs: added two columns to view V_MolUrls and V_RxnMols: s.Published, s.Unprotected

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

Scilligence Cheminformatics Development Suite (DevSuite, http://devsuite.scilligence.com) is a complete toolkits for developers to build web applications and .NET applications.  Dev Suite contains following key modules:

1. JSDraw - 100% Javascript Chemical/Biological Structure Editor
2. JSDraw.WebServices - JSDraw server side web services to exend JSDraw capabilities
3. MolEngine - .NET Cheminformatics Toolkit
4. MolEngine.Plugins - Third-party modules to extend MolEngine capabilities
5. MolSql - Chemistry Cartridge for Microsoft SQL Server

This release includes:

1. JSDraw 2.1.1
   1. bugfix: It cannot read atom color from JSDraw files
   2. bugfix: License code doesn't work
   3. bugfix: charges reset in rxnfile
   4. bugfix: cannot set color: Cyan
   5. bugfix: Sequence editor doesn't work
      
2. JSDraw.WebServices 2.1.1
   1. Upgraded MolEngine to 1.3.8
   2. Integrated JSDraw License with MolEngine License as one
3. MolEngine 1.3.8
   1. Support 32-bit Plugins
   2. bugfix: Cannot load some plugins in COM
   3. bugfix: JSDraw colors are lost
      
4. MolEngine Plugins
   1. No updates in the release
5. MolSql 1.3.8
   1. Upgraded MolEngine to 1.3.8

To download DevSuite or individual modules:

1. JSDraw: http://www.scilligence.com/web/download.aspx?prod=JSDraw
2. JSDraw.WebServices: http://www.scilligence.com/web/download.aspx?prod=JSDraw.WebServices
3. MolEngine: http://www.scilligence.com/web/download.aspx?prod=MolEngine
4. MolEngine.Plugins: http://www.scilligence.com/web/download.aspx?prod=MolEngine.Plugins
5. MolSql: http://www.scilligence.com/web/download.aspx?prod=MolSql

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.

TouchMol Standalone Application

TouchMol for Microsoft Word

TouchMol for Microsoft Excel

TouchMol for Microsoft PowerPoint

TouchMol for Microsoft OneNote

TouchMol will first support Windows XP, Vista, Windows 7, and Windows 8 on both 32-bit and 64-bit system.  TouchMol4Office will first support Microsoft Office 2007, 2010 for both 32-bit and 64-bit editions.

Want to try this out?  Welcome to stop by our booth #1303 at ACS Fall 2012, August 19-23, 2012, in Philadelphia.

Scilligence is pleased to announce the release of Chem4SharePoint version 2.0 today.

With Chem4SharePoint version 1.0, Scilligence introduced the first cheminformatics platform for Microsoft SharePoint, based solely on Microsoft technology. Using SQL Server, IIS, .Net and JavaScript, we created the critical Webparts required for a functional SharePoint chemical data repository and application platform. Using a JSDraw webpart, scientists are able to draw and display chemical structures and sequences directly in SharePoint. With our MolSQL chemistry search engine, substructure, similarity and exact structure searches are performed directly in Microsoft’s SQL Server. No need for big expensive database products. By utilizing our Chrawler product as part of Chem4SharePoint, we provide the capability for a federated enterprise search directly in your SharePoint instance.

With our Chem4SharePoint v2.0 release, Scilligence continues to innovate with the following exciting improvements and changes:

1. New Search Results display
   1. Group by documents, or by structures
   2. Preview document pages
   3. Explore all chemical structures in a document
2. Import, append, and export .sdf files directly to SharePoint lists
3. All chemical objects are structure searchable, including:
   1. Embedded chemical objects
   2. Corporate compound IDs
   3. IUPAC names
   4. CAS Numbers
   5. SMILES and InChi strings
   6. Trade names
   7. Your Synonyms
4. Combined chemical structure, biological, and text searches
5. Integration with corporation compound databases
6. Integration with JSDraw 2.0:
   1. Redesigned TouchMol user interface
   2. Copy and paste from/to chemical structure editor
   3. Mobile Tablet Support

Please contact us from our website http://www.scilligence.com/web/contact.aspx to schedule a demo, begin an evaluation, or request further information.  We know you’ll love the changes, so why not give us a shout?

JSDraw™ is a chemical structure editor/viewer built in 100% Javascript, running on all platforms, including Windows, Windows 8, Mac, Linux, iPad/iPhone, Android tablets/phones and Chromebooks.

JSDraw 2.1.0 includes following improvements and changes:

1. Read/write molfile V3000
2. Enhance Stereochemistry
3. Redesigned Copy/Paste ChemDraw, ISIS/Draw etc.
4. Structures can be pasted to Word, which can be edited with TouchMol for Office
5. Bugfix: *showfilemenu*=false causes a crash
6. Paste structures to Word
7. Bugfix: JSDraw.Table resizing structure column issue

To download JSDraw: http://www.scilligence.com/web/download.aspx?prod=JSDraw

Previously we reported that it is able to paste chemical structures to ChemDraw, ISIS/Draw, SciFinder directly from JSDraw2.  We just finished another feature to directly paste JSDraw structure to Word.

This featue will be able in JSDraw 2.1.0, which is scheduled in August.

Give it a live try at: http://www.elncloud.com/jsdrawapp/jsdraw/Size.htm

JSDraw™ is a chemical structure editor/viewer built in 100% Javascript, running on all platforms, including Windows, Windows 8, Mac, Linux, iPad/iPhone, Android tablets/phones and Chromebooks.

JSDraw 1.3.7 includes several bug fixes.

http://www.scilligence.com/web/download.aspx?prod=JSDraw%201.x

MolEngine is a comprehensive Cheminformatics toolkit, built on 100% .NET.  With MolEngine developers can quickly build high performance chemistry web and standalone applications, such as chemical structure seearch, combi enumreation, generating 2D coordinates, converting file formats etc.

MolEngine 1.3.6 includes following improvements and changes:

1. Add CountAtoms() and CountRings() to Molecule
2. Improved tautomer enumeration and canonicalization
3. A couple of bug fixes

To Download MolEngine: http://www.scilligence.com/web/download.aspx?prod=MolEngine

Download MolEngine Plugins: http://www.scilligence.com/web/download.aspx?prod=MolEngine.Plugins

MolSql is a chemistry cartridge for Microsoft SQL Server, enable high-performance chemical structure search for large-scale data.

MolSql 1.3.6 includes following improves and changes:

1. Add Function: CanonicalCode, CountAtoms, CountRings
2. Improved tautomer enumeration and canonicalization
3. A couple of bug fixes

To Download MolSql: http://www.scilligence.com/web/download.aspx?prod=MolSql

JSDraw™ is a chemical structure editor/viewer built in 100% Javascript, running on all platforms, including Windows, Windows 8, Mac, Linux, iPad/iPhone, Android tablets/phones and Chromebooks.

JSDraw 2.0 is a new major release since JSDraw 1 two years ago.  JSDraw 2.0 includes following improvements and changes:

1. Totally redesigned user interface to better fit touch screen
2. Support multi-touch on touch screen.  JSDraw 2.0 touch gestures includes: zooming, moving, rotating, undo/redo, holding ( http://www.scilligence.com/misc/images/JSDraw2-Gesture.jpg )
3. Revamped toolbar.  Toolbar buttons will automatically be combined according to screen size
4. Ink tools for highlighting during presentation time
5. New namespace: JSDraw2.Editor = JSDraw, JSDraw2.Mol = JsMol, JSDraw2.Table = JsSDF
6. New parameters documented on page: http://www.scilligence.com/web/jsdrawapis.aspx

To download JSDraw: http://www.scilligence.com/web/download.aspx?prod=JSDraw

Chrawler™ is a federated chemical structure search solution for enterprises, which enables users to do one-stop search cross all data sources, including files on network drives, SharePoint database, Emails, ELN, and other databases (Oracle, SQL Server etc.)

Chrawler™ SE 2.0.0 major release includes following improvements and changes:

1. Support chemical structure search, biological sequence search, text search and text-structure combined search
2. Be able to do structure search on corporation compound IDs
3. Be able to do structure search on variety of chemical identifiers, including IUPAC names, CAS no, Trade names, other synonyms, SMILES, InChI etc.
4. Preview document pages
5. Explor all structures in a documents
6. View search results grouped by documents or by structures
7. Fully integrated with JSDraw 2.0
8. Support both SQL Server and Oracle databases

Please contact us (http://www.scilligence.com/web/contact.aspx ) for scheduling demos, and obtaining evaluation licenses.

In JSDraw 2.0.1, JSDraw structures can be copied from, pasted to ChemDraw, ISIS/Draw, SciFinder/Draw, Marvin without ChemDraw ActiveX control.

Give it a live try at: http://www.scilligence.com/web/jsdrawapis.aspx

Another important chemistry feature is finished in development: enhanced stereochemistry.  In the meanwhile, JSDraw will support, reading and writing, Molfile V3000.

Give it a live try at: http://www.scilligence.com/web/jsdrawapis.aspx

This feature will be available in JSDraw 2.0.1, which is scheduled to be released in August.  JSDraw 2.0.0 will be released Monday, July 2nd.